Signature	SharedGeneNum	SharedGenes	AvgPval	BreastC_M13 HOXB_UniqueNum	BreastC_M13 HOXB_pVal	BreastC_M13 HOXB_Unique	BreastC_M9 EMT_UniqueNum	BreastC_M9 EMT_pVal	BreastC_M9 EMT_Unique
AMEF2_Q6	0		0.000273788292178	3	0.000541256677341	HOXB5|HOXB6|HOXB8	35	6.31990701434e-06	ACTA1|ACVR2A|B3GLCT|BHLHE22|BNC2|CNTN1|CRTAP|ETV1|FST|HAPLN1|HAS2|JAZF1|LMCD1|LUZP1|MSTN|MYO9A|NEDD4|NOG|NRP2|PDZRN4|PRRX1|RGS3|RHOBTB1|RORB|RUNX2|SALL1|SDC1|SLC24A2|SLC44A1|SMARCA1|SSPN|SV2A|TGFB3|TPM2|WT1-AS
BENPORATH_EED_TARGETS	0		0.000133544498955	5	0.000267088994828	HOXB2|HOXB3|HOXB6|HOXB7|HOXB8	117	3.08219311054e-12	ADAMTS5|ADAMTS18|ADRA2A|AHR|B3GLCT|BACH2|BHLHE22|BHLHE41|BMP8A|CACNA1G|CEMIP|CH25H|CNRIP1|COL2A1|COL12A1|COL24A1|COLEC12|COMP|CORO6|CSMD1|CTGF|CXCL14|CYP1B1|CYP26A1|DGKI|DKK2|DOK6|DRD4|ELMOD1|EMX2|FBLN7|FBN2|FEZ1|FNDC1|FOXF2|FOXQ1|FZD1|FZD2|FZD10|GABRB2|GALNT10|GJB2|HIC1|HOPX|HOXA13|HOXD9|HTRA1|IGF2|IGFBP3|KCNJ6|KLK4|LAMP5|LAYN|LGR5|LOX|LRCH2|LRFN5|LTBP2|MAFB|METRNL|MOXD1|MSX1|NEFM|NKX3-2|NOG|NPR3|NPTX2|OAF|OLFML2B|PAPPA|PDE10A|PDGFRA|PIGZ|PITX2|PLXNA2|PLXNC1|PMP22|PODN|PRICKLE1|PRKG1|PTHLH|RAB32|RGCC|RNF128|ROBO3|RSPO1|RUNX2|SCIN|SDC2|SFRP4|SHISA2|SHISA6|SHOX2|SLC6A1|SLC30A4|SLC35D3|SLITRK4|SORCS2|SPON1|ST8SIA2|STMN2|TBX5|TLL1|TMEM59L|TRIM9|TWIST1|UAP1L1|UNC5C|VDR|VSTM4|WLS|WNT2|WT1|WT1-AS|ZBTB16|ZNF365|ZNF503
BENPORATH_ES_WITH_H3K27ME3	0		1.22787219325e-05	6	2.45574438641e-05	HOXB2|HOXB3|HOXB6|HOXB7|HOXB8|SKAP1	132	9.08950212654e-16	ADAMTS18|ADGRA2|ADRA2A|AMPH|ARID5B|B3GLCT|BHLHE22|BHLHE41|BMP8A|C14ORF132|CACNA1G|CCDC50|CEMIP|CH25H|CNRIP1|COL2A1|COL8A1|COL12A1|COL24A1|COLEC12|COMP|CORO6|CSMD1|CSMD2|CXCL14|CYP26A1|DGKI|DKK2|DOK6|DRD4|ELMOD1|EPHA3|FAM212A|FBLN5|FBLN7|FBN1|FBN2|FEZ1|FNDC1|FNDC5|FOXF2|FOXQ1|FZD1|FZD2|FZD10|GABRB2|GJB2|HIC1|HOXA13|HOXD9|HTRA3|IGFBP3|IL17D|KLK4|LAMB1|LAMP5|LAYN|LGR5|LMOD1|LRCH2|LRFN5|LTBP2|LY6H|MAFB|MAN1C1|MEIS1|METRNL|MMP2|MSX1|MXRA7|NBL1|NEFH|NEFM|NEGR1|NGF|NKX3-2|NPR3|OAF|OLFML2B|OSR2|PAPPA|PARD3B|PDE10A|PDGFRA|PIGZ|PITX2|PLXNA2|PLXNC1|PMP22|PODN|PRKD1|PRKG1|PTHLH|RARRES2|RGCC|RNF128|ROBO3|RPS6KA2|RSPO1|RUNX2|SATB2|SCIN|SFRP4|SHISA6|SHOX2|SLC6A1|SLC30A4|SLC35D3|SLIT3|SMOC2|SNAI2|SPON1|SPON2|ST8SIA2|STMN2|SYNE1|TBX5|THBS2|TLL1|TMEM59L|TRIM9|TWIST1|UNC5B|UNC5C|VDR|WNT2|WNT5B|WT1|WT1-AS|XYLT1|ZBTB16|ZNF503
BENPORATH_PRC2_TARGETS	0		1.27879140466e-05	5	2.55568945816e-05	HOXB2|HOXB3|HOXB6|HOXB7|HOXB8	73	1.89335116877e-08	ADAMTS18|ADRA2A|BHLHE22|BHLHE41|BMP8A|CACNA1G|CEMIP|CH25H|CNRIP1|COL2A1|COL24A1|COLEC12|COMP|CORO6|CSMD1|CXCL14|CYP26A1|DGKI|DKK2|DOK6|ELMOD1|FBLN7|FBN2|FEZ1|FZD2|FZD10|GJB2|HOXD9|LAMP5|LAYN|LGR5|LRCH2|LRFN5|LTBP2|MAFB|METRNL|MSX1|NEFM|NKX3-2|NPR3|OAF|OLFML2B|PAPPA|PDGFRA|PIGZ|PITX2|PLXNA2|PMP22|PODN|PRKG1|PTHLH|RGCC|RNF128|ROBO3|RSPO1|SHISA6|SHOX2|SLC6A1|SLC30A4|SPON1|ST8SIA2|STMN2|TBX5|TLL1|TMEM59L|TRIM9|UNC5C|VDR|WNT2|WT1|WT1-AS|ZBTB16|ZNF503
BENPORATH_SUZ12_TARGETS	0		0.000126929298894	5	0.000253858597496	HOXB2|HOXB3|HOXB6|HOXB7|HOXB8	119	2.91462622297e-13	ADAM12|ADAMTS5|ADAMTS18|ADGRA2|ADRA2A|BHLHE22|BHLHE41|BMP8A|CACNA1G|CD99|CDH11|CDH13|CEMIP|CH25H|CNRIP1|COL2A1|COL24A1|COLEC12|COMP|CORO6|CSMD1|CXCL14|CYP1B1|CYP26A1|DGKI|DKK2|DLC1|DOK6|EFNB1|ELMOD1|EMX2|FBLN7|FBN1|FBN2|FEZ1|FZD2|FZD10|GAS7|GJB2|GNG12|HOPX|HOXD9|HTRA1|IGF2|ITGA11|KCNJ6|LAMP5|LAYN|LGR5|LOX|LRCH2|LRFN5|LTBP2|MAFB|METRNL|MSX1|NBL1|NDNF|NEFH|NEFM|NGF|NHS|NID2|NKX3-2|NOG|NOTCH2|NPR3|NRK|NRP1|OAF|OLFML2B|OSR2|PAPPA|PDGFRA|PIGZ|PITX2|PLS3|PLXNA2|PMP22|PODN|PRICKLE1|PRKG1|PTHLH|RAB31|RASGRF2|RGCC|RNF128|ROBO3|RORB|RSPO1|SCARF2|SDC2|SHISA2|SHISA6|SHOX2|SLC6A1|SLC30A4|SLITRK4|SPON1|SPON2|SRPX2|ST8SIA2|STMN2|TBX5|TLL1|TLL2|TMEM59L|TRIM9|UNC5B|UNC5C|VDR|WLS|WNT2|WT1|WT1-AS|XYLT1|ZBTB16|ZNF365|ZNF503
CEBP_01	0		0.000340057396719	3	0.000631615519854	HOXB3|HOXB6|SKAP1	34	4.84992735835e-05	ACVR2A|ANGPTL2|BNC2|CADM1|CALN1|CDH13|COL2A1|DNM3|EDNRA|EVA1A|FIBIN|FOXP1|KIAA0355|LRFN5|LSAMP|MAP4K4|NPR3|NREP|NUDT10|OSR2|PALLD|PLXNC1|PRELP|PURG|RGS3|RORA|SGIP1|SHOX2|SNTB2|ST5|THBS1|TPM1|TSHZ3|VGLL3
CTTTAAR_UNKNOWN	0		0.000116811122995	5	0.000227721494307	HOXB3|HOXB7|HOXB8|NELL2|SKAP1	93	5.90075168323e-06	ADAMTS5|ADAMTS6|ADD3|ADGRD1|ANKH|ASPN|AXL|BHLHE41|BMP2K|BNC2|C1QTNF7|C12ORF75|CALN1|CCDC8|CDK14|CERCAM|CFL2|CLDN1|CNTN4|COL6A3|COL8A1|CSDC2|ECM2|EGLN3|EMX2|EPYC|F2RL1|FAP|FBXW7|FEZ2|FMO3|FOXO1|FOXQ1|FST|GJA5|GJC1|HAS2|HMCN1|HOXD10|INHBA|INPP5F|ITGBL1|JAZF1|LGR5|LMCD1|LMNA|LMOD1|MATN3|MEIS1|MFRP|MIR22HG|MITF|MRVI1|NBL1|NEDD4|NEFM|NREP|NXN|OLFML1|OSR2|PAPPA|PDE10A|PDGFRA|PDPN|PITX2|PLXDC2|PMEPA1|PMP22|PPFIA2|PRRX1|PRRX2|PTH2R|RUNX1T1|SALL1|SERPINF1|SFRP4|SLC2A13|SLC25A48|SLC44A1|SLITRK4|SMARCA1|SPRED1|SRPX2|STK38L|TAGLN|TCF4|TGFB3|TNFRSF19|UNC5B|WISP1|WNT5A|ZBTB20|ZNF365
Developmental protein	0		6.9263857042e-09	8	1.38141952948e-08	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8|HOXB9	106	3.85761136054e-11	ACKR3|ALPK3|ARHGAP24|AXIN2|B3GLCT|BICC1|BMP1|BMP8A|CADM1|DAB2|DACT1|DKK2|DKK3|EBF4|EDIL3|EFNB1|EFNB3|EMX2|ENC1|FAT3|FGF1|FZD1|FZD2|FZD10|GADD45B|GAS7|GLI2|GLIS2|GPR161|HEG1|HIC1|HILS1|HOPX|HOXA13|HOXD9|HOXD10|ITGA8|KIAA1217|KIF26B|LRIG3|LRP1|LRP4|MEF2A|MEIS1|MEIS2|MITF|MMP19|MN1|MSX1|NAV1|NOG|NOTCH2|NOTCH3|NRP1|NRP2|NXN|OLFML3|PDGFA|PDGFC|PDGFRA|PDGFRB|PDLIM7|PDPN|PITX2|PRRX1|PRRX2|PRTG|RAB23|RAPGEF2|ROBO3|ROR2|RORB|SATB2|SEMA3D|SEMA5A|SEMA6B|SFRP2|SFRP4|SHISA2|SHOX2|SLIT3|SNAI2|SPATA9|TBX5|TBX18|TDRD9|TENM4|TLL1|TLL2|TMEM2|TNFRSF12A|TSHZ3|TWIST1|TWIST2|TWSG1|UNC5B|UNC5C|VEGFC|VENTX|WLS|WNT2|WNT5A|WNT5B|ZC4H2|ZFP36L2|ZNF423
FOXO4_02	0		0.000331586387494	3	0.000554576461854	HOXB4|HOXB8|SKAP1	32	0.000108596313134	ATXN1|CACNA2D1|CADM1|CDKN1C|CFL2|COL8A1|DOCK4|DTNA|EML1|FLNC|FOXO1|HAS2|HMCN1|KLF12|LIX1L|LOX|MEIS2|MRGPRF|MXRA8|NEDD4|NXN|PALM|PAPPA|PDZRN4|PITX2|PLXDC2|RUNX1|RUNX1T1|SATB2|TGFB3|TNFSF4|TSPAN4
HNF1_Q6	0		0.000375054754093	3	0.000490043339031	CYFIP2|HOXB3|HOXB9	30	0.000260066169156	ACVR2A|AFP|ALB|ARHGAP24|AXIN2|F2RL1|FAM20C|FIBIN|HOXD10|LPP|MPRIP|NOG|NRK|NRP1|NTF3|PDGFRA|PDZRN4|PPFIBP1|PRICKLE1|RASGRF2|ROBO3|RORA|RORB|RUNX1|SATB2|SFRP4|SLC39A14|SPINK1|SULF2|ZFPM2
Human Breast_Wang05_410genes_up_BT-BAF57cells (16135788-Table13)	0		0.000373645884944	3	0.000747291769889	HOXB5|HOXB6|HOXB7	94	2.5015238678e-44	ACTA2|ALDH1L2|ANTXR1|ATP10D|ATXN1|BCAT1|BICD1|C1S|CADM1|CALD1|CD55|CD109|CFH|CFHR1|COL1A1|COL3A1|COL5A1|COL6A3|COL8A1|COL12A1|CTDSP2|CTHRC1|DAB2|DACT1|DCN|DIO2|DPYSL3|EDIL3|FAP|FBLIM1|FHL2|FKBP7|FN1|FNDC1|FOXO1|FZD1|GJB2|GULP1|HEG1|HMCN1|IGFBP4|IGFBP6|IL1R1|ITGB5|JCAD|LIMA1|LIMS3|LMCD1|LPP|LUM|MAFB|MAN1C1|MFAP5|MMP2|MYL9|MYLK|NAP1L3|NEGR1|NEXN|NID1|NID2|NLGN4X|PARVA|PGM2L1|PMP22|POSTN|PRR5L|PRRX1|PRRX2|PTGFRN|RASGRF2|RNF144A|SDC2|SERPINB7|SIPA1L1|SLC44A1|SMTN|SPOCD1|SPOCK1|ST5|SULF1|SULF2|TAGLN|TBX18|TGFBI|TGFBR1|TIMP2|TLL2|TMEM2|TNFRSF19|UNC5B|VAT1L|VCAN|WT1
Human Leukemia_Haferlach09_500genes (19429869-TableS1)	0		0.000416894155881	5	1.76440887539e-06	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6	37	0.000832023902886	ANKH|ARHGEF40|C20ORF194|COL1A2|COL8A2|CST3|DDR2|FEZ2|FGFR1|FRMD6|GAS6|GJA1|HOMER3|HOXA13|INHBA|LAMC1|LMNA|LPP|MAN1A1|MEIS1|MITF|NAV1|NOTCH2|OLFML3|OSBPL5|P3H1|PCNX1|PLAUR|PRICKLE1|RPS6KA2|SERPINF1|SFXN3|SLC35B4|SLC44A1|SPARC|ZNF503|ZNF608
Human Leukemia_Verhaak05_568genes (16109776-TableS1)	0		7.53584602352e-05	4	0.000148050893679	HOXB2|HOXB3|HOXB5|HOXB6	53	2.66602679133e-06	ALDH2|ARHGEF17|CAVIN1|CHST15|CLIP3|CYP1B1|DCHS1|DSE|EHD3|F2RL1|FGFR1|FOXO1|FZD2|GJA1|HOMER3|HOPX|HSPG2|LAMC1|LAMP5|LMNA|LPAR6|MAFB|MAN1A1|MEF2A|MEG3|MEIS1|MMP2|MN1|MXRA7|MYH11|NBL1|NEDD4|NPR3|NT5E|PALM|PAM|PLAUR|PXDN|RPS6KA2|RUNX1|RUNX1T1|SCHIP1|SERPINF1|SERPING1|SPARC|SPON1|TCN1|TGFB1I1|TGFBI|THBS1|TMEM158|TMEM204|VCAN
Human StemCell_Hao09_612genes (20077526-TableS3)	0		3.71942128565e-06	5	7.05502694868e-06	HOXB3|HOXB4|HOXB6|HOXB8|SKAP1	57	3.83815622612e-07	ANXA6|ARMC9|AXIN2|CD99P1|COL6A1|COL6A3|COL12A1|CPT1C|CRIM1|CTDSP2|CTGF|CTHRC1|EDNRA|ENC1|FKBP7|FOXO1|FSTL1|GALNT5|GJB2|GLIS3|GLS|IGF2|JCAD|LOXL2|MAN1A1|MAP4K4|MEIS2|MITF|MSRB3|MSX1|MYLK|NR2F1|OLFML2A|OSR2|PDGFA|PDGFC|PHLDB2|PLAU|PMEPA1|PPFIBP1|RCBTB2|RPS6KA2|SAMD4A|SATB2|SAV1|SDC1|SH3PXD2A|SLC44A1|SMAD7|SULF2|TEAD3|THBS1|TPM2|TWIST1|VCAN|VDR|WLS
IK2_01	0		0.000325987211952	3	0.000631615519854	HOXB2|HOXB4|HOXB5	35	2.03589040492e-05	ACTB|ACTN1|AXIN2|B3GLCT|CACNA1C|CALU|CNTN1|COL12A1|CTGF|CXCL14|CYP26A1|DOCK4|ETV1|FOSL2|IGFBP6|KLF12|LRMDA|LRP1|LUZP1|MN1|MSX1|MXRA8|MYH11|NRP2|OSR2|PDGFC|PMP22|PPFIA2|RBMS2|RORA|RUNX1T1|SERPINB7|SGCD|ZEB1|ZFPM2
NKX25_02	0		0.000413054152431	3	0.000561314789092	HOXB6|NELL2|SKAP1	31	0.000264793515769	CACNA1C|CFL2|CNTN4|COL12A1|CTSK|CXCL14|CYTH3|DOCK4|FBXW7|FLNA|GJA1|HAS2|INHBA|KLF12|LRP1|LRRC15|MEIS2|PDZRN4|PITX2|PPFIBP1|PRRX1|PTPN21|ROBO3|RORA|SHOX2|SULF1|TMEM178A|TPM2|TSPAN2|VGLL4|ZNF423
PAX2_02	0		8.90070980098e-06	4	1.69059792638e-05	HOXB2|HOXB3|HOXB4|HOXB5	37	8.95440338151e-07	ADAMTSL1|BAHD1|CADPS|CFL2|COL10A1|DTNA|EHBP1|FBXL22|FKBP7|FLNC|FSTL1|FZD10|GLT8D2|IGF2BP1|KLHL3|LOX|LSAMP|MEIS2|MN1|NR2F1|PCDH7|PCNX1|PFKFB3|PMP22|PTH1R|RASAL2|RBMS3|RUNX1T1|SDC1|SLC20A1|ST8SIA2|STMN2|TBX5|TCF4|TGFBR1|ZBTB16|ZFPM2
PAX4_04	0		7.29028134174e-05	4	8.70760753388e-06	HOXB4|HOXB7|HOXB8|HOXB9	28	0.000137098019301	ABI3BP|AKAP12|BACH2|CALD1|CDC42EP5|ETV1|FOXP1|HOXD9|KLF9|LIMS1|LIX1L|MEIS1|MPRIP|MYLK|NREP|PAPPA|PDZRN4|PHLDA3|PITX2|PLXNA2|PRRX2|RBMS3|RGS3|SMARCA1|TCF4|TGFB3|WNT2|ZBTB20
PIT1_Q6	0		0.000246069293681	5	2.375560813e-07	HOXB3|HOXB5|HOXB6|HOXB8|HOXB9	28	0.000491901031281	ACVR1|ADAMTSL1|ASPN|C1QTNF6|CACNA1C|CADM1|CCDC8|DCHS1|ENTPD1|FAP|FEZ1|IBSP|INHBA|ITGA8|MAP3K20|MEIS1|MEIS2|NOG|NPR3|NRP1|PITX2|RBFOX2|RORA|SALL1|TEAD1|TPM1|TWIST1|VGLL3
POU6F1_01	0		0.000204114203521	3	0.000408154036743	CYFIP2|HOXB4|HOXB6	37	7.43702984271e-08	BNC2|CACNA1C|CADM1|CFL2|COL1A2|CTSK|CXORF57|DTNA|EMX2|ETV1|FBXW7|FOXP1|FSTL1|LRMDA|LRRC15|MEIS1|MEIS2|NGF|NR2F1|NTF3|OLFML3|PCDH7|PDZRN4|PITX2|PRICKLE2|PTH1R|RBFOX2|RHOBTB1|RORA|SCG2|TLL1|TMEM178A|TSPAN2|USP11|VGLL3|ZBTB20|ZFPM2
S8_01	0		0.000212499453293	3	0.000424891881723	CYFIP2|HOXB6|HOXB7	37	1.07024863183e-07	BMP1|CALD1|CNN3|CXCL14|DIO2|EFNB3|ETV1|FBLN2|FOXP1|FST|HAS2|INPP5F|ITGA11|JAZF1|LAMB1|LRFN5|MEIS1|MITF|NLGN2|NRP1|OSR2|PARD6G|PDZRN4|PRRX1|PTH1R|RORB|RUNX1T1|SH3BGRL2|SHOX2|SLC24A2|SLC39A14|SOCS5|SULF2|ZBTB20|ZFHX4|ZFPM2|ZNF423
TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_16D_UP	0		0.00046838687962	3	0.000199164932981	HOXB2|HOXB3|HOXB-AS3	23	0.000737608826258	ABCB4|ADGRA2|AHR|APCDD1|ATP10A|BEND6|C12ORF75|FHL2|FKBP1B|FN1|HOPX|LAMP5|LUM|MEIS1|NEGR1|PALLD|SLITRK4|SMYD3|TDRD9|THBS1|TMEM200A|WT1|XYLT1
TATA_C	0		0.000201858539942	4	2.28360870604e-05	HOXB4|HOXB6|HOXB8|HOXB9	32	0.000380880992823	ACTB|AKAP12|ANXA1|CD109|CFL2|COL1A1|COL8A1|DIO2|DKK2|FBXL22|FOXP1|GJA5|HAS2|HOXD9|HOXD10|LMOD1|LOX|MMP3|MMP13|MYH11|MYLK|NEDD4|PDGFRB|PITX2|RASL11B|SHISA6|SLIT3|TAGLN|TCF4|TGFB3|TGFBR1|TWIST1
TGATTTRY_GFI1_01	0		0.000347232061791	5	6.49240156998e-07	HOXB5|HOXB6|HOXB7|HOXB8|HOXB9	32	0.000693814883426	ALPK2|C1QTNF7|CALN1|CCDC80|CDH13|CDK14|COLEC12|CRIM1|DTNA|FN1|GREM1|HOXD9|HOXD10|JAZF1|LRMDA|LSAMP|MEIS2|NAP1L3|NRP2|PITX2|RASGRF2|ROBO3|RUNX1T1|SALL1|TEAD1|TMEM117|TMEM178A|WNT2|ZBTB20|ZFHX4|ZFPM2|ZNF503
WANG_MLL_TARGETS	0		0.000424502239149	3	0.000849004478297	HOXB3|HOXB5|HOXB6	61	3.32746695214e-17	ABI3BP|ALDH2|ARID5B|ASPN|CACNA1G|CALHM5|CCDC80|CLMP|COL2A1|COL6A1|COL6A2|COL10A1|CPQ|CPZ|CYS1|DAB2|DKK3|EMILIN1|ETV1|EVA1A|FBN2|FUT11|GLT8D2|H6PD|HOXA13|IGFBP6|ISLR|KIAA1024|LAMA1|LRIG3|MAFB|MEG3|MMP2|MMP13|MMP14|MRC2|NDNF|NEGR1|OMD|OSR2|PITX2|PLA2R1|POSTN|PTHLH|RGS16|RNF144A|SCARF2|SFRP2|SH3RF3|SHOX2|SLIT3|SMOC2|SNED1|SPON2|TBX15|TGFBI|THBS2|TMEM119|TWIST2|VEGFC|ZNF503
WANG_SMARCE1_TARGETS_UP	0		0.000402806044135	3	0.000805612088269	HOXB5|HOXB6|HOXB7	93	2.5564774385e-42	ACTA2|ALDH1L2|ANTXR1|ATP10D|ATXN1|BCAT1|C1S|CADM1|CALD1|CD55|CD109|CFH|COL1A1|COL3A1|COL5A1|COL6A3|COL8A1|COL12A1|CTHRC1|DAB2|DACT1|DCN|DIO2|DPYSL3|EDIL3|FAP|FBLIM1|FHL2|FKBP7|FN1|FNDC1|FOXO1|FZD1|GJB2|GULP1|HEG1|HMCN1|IGFBP4|IGFBP6|IL1R1|ITGB3|ITGB5|JCAD|LIMA1|LIMS1|LMCD1|LPP|LUM|MAFB|MAN1C1|MFAP5|MMP2|MYL9|MYLK|NAP1L3|NEGR1|NEXN|NID1|NID2|NLGN4X|PARVA|PCDH7|PGM2L1|PMP22|POSTN|PRR5L|PRRX1|PRRX2|PTGFRN|RASGRF2|RNF144A|SDC2|SERPINB7|SIPA1L1|SLC44A1|SMTN|SPOCD1|SPOCK1|ST5|SULF1|SULF2|TAGLN|TGFBI|TGFBR1|TIMP2|TLL2|TMEM2|TNFRSF19|UNC5B|VAT1L|VCAN|WISP1|WT1
YCATTAA_UNKNOWN	0		0.000158668617048	4	0.000315802978541	HOXB3|HOXB5|HOXB6|HOXB8	62	1.53425555543e-06	ACVR1|ADAMTSL2|BACH2|BHLHE22|BNC2|C1QTNF7|CD55|CDK14|CDKN2B|CHST15|CKAP4|COL12A1|CTDSP2|CXCL14|EMX2|ENOX1|FBXL22|FSTL1|HOXD10|JAZF1|LIMS1|LMNA|LRCH1|LSM11|MITF|MMP19|MSTN|NDNF|NLGN2|NPR3|NPTX2|NR2F1|NRP1|NTM|PABPC5|PCDH7|PCNX1|PDGFRA|PITX2|PLXNA2|PMEPA1|PTGER1|PTH2R|RASGRF2|RHOBTB1|RORB|RUNX1|RUNX1T1|SATB2|SGIP1|SHISA6|SPRED1|ST8SIA2|SULF1|SV2A|TMEM178A|TPM2|TSHZ3|ZEB1|ZNF423|ZNF503|ZNF532
animal organ morphogenesis [GoID:GO:0009887; evidenceTypes:IBA|IC|IDA|IEA|IEP|IGI|IMP|ISS|NAS|TAS]	0		4.49257259353e-07	7	8.98514518706e-07	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8	138	4.66199257651e-20	ACTA1|ACTA2|ACVR1|ADAMTS5|ADAMTS16|AJAP1|AKT3|ALDH1A3|ANKRD6|ARID5B|ASPN|AXIN2|BHLHE41|BMP1|CDH2|COL1A1|COL1A2|COL2A1|COL3A1|COL5A1|COL5A2|COL8A1|COL8A2|COL11A1|COL18A1|COMP|CTGF|CTHRC1|DAB2|DACT1|DCHS1|DCN|DLC1|ELN|FAM20C|FBN1|FBN2|FBXW7|FGF1|FGF18|FGFR1|FHL2|FOXF2|FOXO1|FZD1|FZD2|GJA1|GJA5|GLI2|GPC6|GREM1|HAS2|HEG1|HOXD9|HOXD10|HTR2B|HTRA1|ILK|INHBA|ITGA8|KIF26B|KLHL3|KLK4|LAMB1|LIMS2|LRIG3|LRP4|LY6H|MAFB|MEIS1|MFAP2|MFRP|MICAL2|MMP2|MMP13|MMP14|MMP16|MSX1|MYLK|NECTIN3|NEDD4|NKX3-2|NOG|NOTCH2|NRP1|NRP2|OSR2|PAM|PARVA|PDGFA|PDGFC|PDGFRA|PDGFRB|PITX2|PKD2|PRICKLE1|PRICKLE2|PRRX1|PTN|RAB23|RFLNB|ROR2|RORB|RUNX2|SALL1|SATB2|SAV1|SDC1|SERPINH1|SFRP2|SFRP4|SH3PXD2B|SHOX2|SKI|SLIT3|SMAD7|SNAI2|STX2|SULF1|SULF2|TBX5|TBX15|TENM3|TGFB3|TGFBR1|THY1|TNC|TPM1|TWIST1|TWSG1|VDR|VEGFC|WNT2|WNT5A|WT1|WWTR1|ZEB1|ZFPM2
chordate embryonic development [GoID:GO:0043009; evidenceTypes:IBA|IC|IDA|IEA|IEP|IMP|ISS|NAS|TAS]	0		7.22761526287e-06	8	3.76858942445e-10	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8|HOXB9	61	1.44548536668e-05	ACVR1|ACVR2A|AXIN2|COL1A1|COL2A1|COL11A1|CTHRC1|DACT1|DCHS1|DLC1|EDNRA|FAM212A|FGFR1|FZD1|FZD2|GJA1|GLI2|GPR161|HEG1|HOPX|HOXD9|HOXD10|IGF2|ITGB1|KIAA1217|LATS2|LUZP1|MMP14|MMP16|MSX1|MYH9|NKX3-2|NOG|NRK|OSR2|PCSK5|PDGFRA|PITX2|PKD2|PLXNA2|PRICKLE1|PRRX1|RARRES2|RCN1|ROR2|RUNX2|SALL4|SATB2|SFRP2|SHOX2|SKI|SULF1|SULF2|TBX15|TGFB3|TGFBR1|TWIST1|WNT2|WNT5A|ZEB1|ZFPM2
embryo development [GoID:GO:0009790; evidenceTypes:IBA|IC|IDA|IEA|IEP|IGI|IMP|ISS|NAS|TAS]	0		1.16546972126e-08	8	2.33074050964e-08	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8|HOXB9	115	1.98932873003e-12	ACVR1|ACVR2A|ALDH1A3|AXIN2|CACNA1C|COL1A1|COL2A1|COL5A1|COL5A2|COL6A1|COL7A1|COL8A1|COL11A1|COL12A1|CTHRC1|DACT1|DCHS1|DLC1|EDNRA|EFNB1|EXT2|FAM212A|FBN1|FBN2|FGFR1|FN1|FOXF2|FZD1|FZD2|GJA1|GJA5|GLI2|GPR161|GREM1|HEG1|HOPX|HOXD9|HOXD10|HTR2B|IGF2|INHBA|ITGA5|ITGA8|ITGAV|ITGB1|ITGB3|ITGB5|KIAA1217|LAMA1|LAMA2|LAMA4|LAMB1|LATS2|LRIG3|LRP4|LUZP1|MAFB|MAP3K20|MAPK7|MFAP2|MFRP|MICAL2|MMP2|MMP14|MMP16|MSX1|MYADM|MYH9|NKX3-2|NOG|NRK|NRP1|OSR2|PCSK5|PDGFA|PDGFC|PDGFRA|PHLDB2|PITX2|PKD2|PLXNA2|PRICKLE1|PRRX1|RARRES2|RCN1|ROR2|RUNX2|SALL1|SALL4|SATB2|SEPT7|SFRP2|SHOX2|SKI|SULF1|SULF2|TBX5|TBX15|TBX18|TEAD1|TEAD3|TENM4|TGFB1I1|TGFB3|TGFBR1|TWIST1|TWSG1|VEGFC|WLS|WNT2|WNT5A|WT1|ZBTB16|ZEB1|ZFPM2
embryo development ending in birth or egg hatching [GoID:GO:0009792; evidenceTypes:IBA|IC|IDA|IEA|IEP|IMP|ISS|NAS|TAS]	0		9.60751068927e-06	8	4.05853337243e-10	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8|HOXB9	61	1.92146155252e-05	ACVR1|ACVR2A|AXIN2|COL1A1|COL2A1|COL11A1|CTHRC1|DACT1|DCHS1|DLC1|EDNRA|FAM212A|FGFR1|FZD1|FZD2|GJA1|GLI2|GPR161|HEG1|HOPX|HOXD9|HOXD10|IGF2|ITGB1|KIAA1217|LATS2|LUZP1|MMP14|MMP16|MSX1|MYH9|NKX3-2|NOG|NRK|OSR2|PCSK5|PDGFRA|PITX2|PKD2|PLXNA2|PRICKLE1|PRRX1|RARRES2|RCN1|ROR2|RUNX2|SALL4|SATB2|SFRP2|SHOX2|SKI|SULF1|SULF2|TBX15|TGFB3|TGFBR1|TWIST1|WNT2|WNT5A|ZEB1|ZFPM2
embryonic morphogenesis [GoID:GO:0048598; evidenceTypes:IBA|IC|IDA|IEA|IEP|IGI|IMP|ISS|NAS|TAS]	0		1.11270631883e-08	7	2.2254078834e-08	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8	85	4.75426437355e-14	ACVR1|ACVR2A|ALDH1A3|CACNA1C|COL2A1|COL5A1|COL5A2|COL6A1|COL7A1|COL8A1|COL11A1|COL12A1|CTHRC1|DACT1|DLC1|EXT2|FBN1|FBN2|FGFR1|FN1|FOXF2|FZD1|FZD2|GJA1|GJA5|GLI2|GREM1|HOXD9|HOXD10|HTR2B|IGF2|INHBA|ITGA5|ITGA8|ITGAV|ITGB1|ITGB3|ITGB5|LAMB1|LATS2|LRIG3|LRP4|LUZP1|MAFB|MAP3K20|MAPK7|MFAP2|MICAL2|MMP2|MMP14|MMP16|MSX1|MYADM|NKX3-2|NOG|OSR2|PDGFRA|PHLDB2|PITX2|PKD2|PRICKLE1|PRRX1|ROR2|RUNX2|SALL1|SALL4|SATB2|SFRP2|SHOX2|SKI|SULF1|TBX5|TBX15|TENM4|TGFB1I1|TGFB3|TGFBR1|TWIST1|TWSG1|VEGFC|WLS|WNT2|WNT5A|ZBTB16|ZEB1
embryonic organ development [GoID:GO:0048568; evidenceTypes:IBA|IDA|IEA|IEP|IGI|IMP|ISS|TAS]	0		6.54841474562e-06	7	2.94965133614e-09	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8	50	1.30938798399e-05	ACVR1|ALDH1A3|COL2A1|COL11A1|CTHRC1|FBN1|FBN2|FGFR1|FOXF2|FZD2|GJA1|GJA5|GLI2|HOXD9|HOXD10|IGF2|ITGA8|LRIG3|MAFB|MFAP2|MICAL2|MMP14|MMP16|MSX1|NKX3-2|NOG|NRK|OSR2|PCSK5|PDGFA|PDGFRA|PITX2|PKD2|PRRX1|RARRES2|ROR2|RUNX2|SALL1|SATB2|SHOX2|TBX15|TEAD1|TEAD3|TGFB3|TGFBR1|TWIST1|WNT2|WNT5A|ZEB1|ZFPM2
embryonic organ morphogenesis [GoID:GO:0048562; evidenceTypes:IBA|IDA|IEA|IEP|IGI|IMP|ISS]	0		5.7535892173e-07	7	1.72730810185e-10	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8	40	1.15054511265e-06	ACVR1|ALDH1A3|COL2A1|COL11A1|CTHRC1|FBN1|FBN2|FGFR1|FOXF2|FZD2|GJA1|GLI2|HOXD9|HOXD10|ITGA8|LRIG3|MAFB|MFAP2|MICAL2|MMP14|MMP16|MSX1|NKX3-2|NOG|OSR2|PDGFRA|PITX2|PKD2|PRRX1|ROR2|RUNX2|SALL1|SATB2|SHOX2|TBX15|TGFB3|TGFBR1|TWIST1|WNT5A|ZEB1
embryonic skeletal system development [GoID:GO:0048706; evidenceTypes:IBA|IDA|IEA|IEP|IMP|ISS]	0		1.73208098169e-08	8	1.96406751316e-15	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8|HOXB9	26	3.46416176697e-08	ACVR2A|COL1A1|COL2A1|COL11A1|HOXD9|HOXD10|KIAA1217|MMP14|MMP16|NKX3-2|NOG|OSR2|PCSK5|PDGFRA|PRRX1|RUNX2|SATB2|SHOX2|SULF1|SULF2|TBX15|TGFB3|TGFBR1|TWIST1|WNT5A|ZEB1
embryonic skeletal system morphogenesis [GoID:GO:0048704; evidenceTypes:IBA|IDA|IEA|IMP|ISS]	0		9.04603796418e-06	7	6.86506413377e-14	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8	18	1.80920758597e-05	COL2A1|COL11A1|HOXD9|HOXD10|MMP14|MMP16|NOG|OSR2|PDGFRA|PRRX1|RUNX2|SATB2|SHOX2|TBX15|TGFB3|TGFBR1|TWIST1|ZEB1
skeletal system development [GoID:GO:0001501; evidenceTypes:IBA|IDA|IEA|IEP|IGI|IMP|ISS|NAS|TAS]	0		6.9320955528e-11	8	1.38641911056e-10	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8|HOXB9	102	8.01926412126e-28	ACVR2A|ADAMTS4|ADAMTS12|AEBP1|AKAP13|ANKH|ANO6|ARID5B|ARSE|AXIN2|BMP1|BMP8A|CDH11|COL1A1|COL1A2|COL2A1|COL3A1|COL5A2|COL10A1|COL11A1|COL12A1|COMP|CTGF|DCHS1|EVC|FAM20C|FBN1|FBN2|FGF18|FGFR1|FOXP1|GJA5|GLI2|GPR68|GREM1|HAPLN1|HAS2|HOXA13|HOXD9|HOXD10|IGF2|IGFBP4|KIAA1217|KLF10|LOXL2|LRRC17|LUM|MATN3|MEIS1|MMP2|MMP13|MMP14|MMP16|MSX1|NKX3-2|NOG|NPR2|NPR3|OSR2|P3H1|PCSK5|PDGFC|PDGFRA|PITX2|PLS3|POSTN|PRELP|PRRX1|PTH1R|PTHLH|RAB23|RFLNA|RFLNB|ROR2|RUNX1|RUNX2|SATB2|SCIN|SERPINH1|SFRP2|SFRP4|SH3PXD2B|SHOX2|SKI|SMAD9|SNAI2|SPARC|SULF1|SULF2|TBX15|TGFB3|TGFBI|TGFBR1|TLL1|TMEM119|TWIST1|VCAN|VDR|WNT5A|WNT5B|ZBTB16|ZEB1
skeletal system morphogenesis [GoID:GO:0048705; evidenceTypes:IBA|IDA|IEA|IGI|IMP|ISS|TAS]	0		3.80938853108e-11	7	2.11292958995e-11	HOXB2|HOXB3|HOXB4|HOXB5|HOXB6|HOXB7|HOXB8	41	5.50584747222e-11	ARID5B|AXIN2|BMP1|COL1A1|COL2A1|COL11A1|COMP|CTGF|FBN2|FGF18|FGFR1|GREM1|HAS2|HOXD9|HOXD10|MMP2|MMP13|MMP14|MMP16|MSX1|NKX3-2|NOG|OSR2|PDGFRA|PRRX1|RAB23|RFLNB|ROR2|RUNX2|SATB2|SERPINH1|SFRP2|SFRP4|SH3PXD2B|SHOX2|SKI|TBX15|TGFB3|TGFBR1|TWIST1|ZEB1
